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Slide-tags enables single-nucleus barcoding for multimodal spatial genomics
Russell, A.J.C., Weir, J.A., Nadaf, N.M., Shabet, M., Kumar, V., Kambhampati, S., Raichur, R., Marrero, G.J., Liu, S., Balderrama, K.S., Vanderbrug, C.R., Shanmugam, V., Tian, L., Iorgulescu, J. B., Yoon, C.H., Wu, C.J., Macosko, E.Z., Chen, F. Nature (2023).
Spatially mapping T cell receptors and transcriptomes reveals distinct immune niches and interactions underlying the adaptive immune response
Liu, S.*, Iorgulescu, J. B.*, Li, S.*, Borji, M., Barrera-Lopez, I. A., Shanmugam, V., Lyu, H., Morriss, J. W., Garcia, Z. N., Murray, E., Reardon, D. A., Yoon, C. H., Braun, D. A., Livak, K. J., Wu, C. J., Chen, F. Immunity, 55, 1940-1952.e5. (2022). [Protocol]
Microfluidic Squeezing Enables MHC Class I Antigen Presentation by Diverse Immune Cells to Elicit CD8+ T Cell Responses with Antitumor Activity
Booty, M. G.*, Hlavaty, K. A.*, Stockmann, A., Tian, L., How, E., Subramanya, D., Venkitaraman, A., Yee, C., Ozay, E. I., Pryor, O., Smith, C., Volk, K., Blagovic, K., Vicente-Suarez, I., Yarar, D., Myint, M., Merino, A., Chow, J., Abdeljawad, T., An, H., Stokes, B., Liu, S., Mao, S., Heimann, M., von Andrian, U. H., Jensen, K. F., Langer, R. S., Knoetgen, H., Trumpfheller, C., Bernstein, H., Sharei, A., Loughhead, S. M. The Journal of Immunology, 208(4) 929-940. (2021).
RNA timestamps identify the age of single molecules in RNA sequencing
Rodriques, S.G.*, Chen, L.M.*, Liu, S., Zhong, E.D., Scherrer, J.R., Boyden, E.S., Chen, F. Nature Biotechnology. (2020). [Primer talk]
Efficient, continuous mutagenesis in human cells using a pseudo-random DNA editor
Chen, H., Liu, S.*, Padula, S.*, Griswold, K., Lin, A., Zhao, T., Marshall, J. L., Chen, F. Nature Biotechnology, 38, 165-168 (2019). [Nature Bioengineering Blog]
Ex Vivo Cytosolic Delivery of Functional Macromolecules to Immune Cells
Sharei, A.*, Trifonova, R.*, Jhunjhunwala, S.*, Hartoularos, G., Eyerman, A.T., Lytton-Jean, A., Angin, M., Sharma, S. , Poceviciute, R., Mao, S., Heimann, M., Liu, S., Talkar, T., Khan, O. F., Addo, M., von Andrian, U. H., Anderson, D. G., Langer, R., Lieberman, J., Jensen, K. F. PLOS One, 10(4): e0118803 (2015).